Designing and executing scientific workflows with a programmable integrator | Zendy

Mónica Chagoyen | Zendy; M.E. Kurul | Zendy; P.A. De-Alarcon | Zendy; J.M. Carazo | Zendy; Amarnath Gupta | Zendy

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Designing and executing scientific workflows with a programmable integrator

Author(s) -

Mónica Chagoyen,

M.E. Kurul,

P.A. De-Alarcon,

J.M. Carazo,

Amarnath Gupta

Publication year - 2004

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bth209

Subject(s) - computer science , workflow , scripting language , xml , java , python (programming language) , parsing , mit license , integrator , software , software engineering , programming language , license , database , world wide web , operating system , computer network , bandwidth (computing)

As in many other fields of science, computational methods in molecular biology need to intersperse information access and algorithm execution in a computational workflow. Users often find difficulties when transferring data between data sources and applications. In most cases there is no standard solution for workflow design and execution and tailored scripting mechanisms are implemented in a case by case basis.

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