Open AccessIdentifying multiple alignment regions satisfying simple formulas and patterns
Author(s) -
Nikola M. Stojanović,
Ken Dewar
Publication year - 2004
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/bth196
Subject(s) - simple (philosophy) , documentation , set (abstract data type) , computer science , software , data mining , theoretical computer science , algorithm , programming language , epistemology , philosophy
When studying multiple alignments of genomic sequences one frequently aims to locate and count regions which satisfy a set of constraints. These regions may be putatively functional, but researchers may also be interested in quantifying the frequency of occurrences of certain patterns.
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