ConSSeq: a web-based application for analysis of amino acid conservation based on HSSP database and within context of structure | Zendy

R. H. Higa | Zendy; A. J. Montagner | Zendy; Roberto Coiti Togawa | Zendy; Paula R. Kuser | Zendy; M. E. B. Yamagishi | Zendy; A. L. Mancini | Zendy; Γεώργιος Παππάς | Zendy; R. T. Miura | Zendy; L. G. Horita | Zendy; Goran Neshich | Zendy

Open Access

ConSSeq: a web-based application for analysis of amino acid conservation based on HSSP database and within context of structure

Author(s) -

R. H. Higa,

A. J. Montagner,

Roberto Coiti Togawa,

Paula R. Kuser,

M. E. B. Yamagishi,

A. L. Mancini,

Γεώργιος Παππάς,

R. T. Miura,

L. G. Horita,

Goran Neshich

Publication year - 2004

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bth185

Subject(s) - java applet , computer science , database , protein data bank (rcsb pdb) , context (archaeology) , java , world wide web , biology , programming language , biochemistry , paleontology

A web-based application to analyze protein amino acids conservation-Consensus Sequence (ConSSeq) is presented. ConSSeq graphically represents information about amino acid conservation based on sequence alignments reported in homology-derived structures of proteins. Beyond the relative entropy for each position in the alignment, ConSSeq also presents the consensus sequence and information about the amino acids, which are predominant at each position of the alignment. ConSSeq is part of the STING Millennium Suite and is implemented as a Java Applet.

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