GenAlyzer: interactive visualization of sequence similarities between entire genomes | Zendy

Jomuna V. Choudhuri | Zendy; Chris Schleiermacher | Zendy; Stefan Kurtz | Zendy; Robert Giegerich | Zendy

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GenAlyzer: interactive visualization of sequence similarities between entire genomes

Author(s) -

Jomuna V. Choudhuri,

Chris Schleiermacher,

Stefan Kurtz,

Robert Giegerich

Publication year - 2004

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bth161

Subject(s) - visualization , substring , computer science , granularity , software , sequence (biology) , matching (statistics) , genome , software visualization , data mining , computational biology , information retrieval , biology , programming language , data structure , genetics , software system , mathematics , software construction , statistics , gene

Genalyzer is a software tool designed for the interactive visualization of sequence matches between DNA or protein sequences. It provides visualizations on different levels of granularity, from complete overviews via zoomed regions to alignments of particular matching substrings. Genalyzer can efficiently handle very large datasets, allowing to display tens of thousands of matches between sequences of tens of millions of bases.

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