An object model and database for functional genomics | Zendy

Andrew R. Jones | Zendy; Ela Hunt | Zendy; Jonathan M. Wastling | Zendy; Angel Pizarro | Zendy; Christian J. Stoeckert | Zendy

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An object model and database for functional genomics

Author(s) -

Andrew R. Jones,

Ela Hunt,

Jonathan M. Wastling,

Angel Pizarro,

Christian J. Stoeckert

Publication year - 2004

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bth130

Subject(s) - computer science , proteomics , functional genomics , genomics , microarray databases , dna microarray , database , computational biology , biology , genome , gene , genetics , gene expression

Large-scale functional genomics analysis is now feasible and presents significant challenges in data analysis, storage and querying. Data standards are required to enable the development of public data repositories and to improve data sharing. There is an established data format for microarrays (microarray gene expression markup language, MAGE-ML) and a draft standard for proteomics (PEDRo). We believe that all types of functional genomics experiments should be annotated in a consistent manner, and we hope to open up new ways of comparing multiple datasets used in functional genomics.

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