OBIYagns: a grid-based biochemical simulator with a parameter estimator | Zendy

Shuhei Kimura | Zendy; Takuji Kawasaki | Zendy; Mariko Hatakeyama | Zendy; Takashi Naka | Zendy; Fumikazu Konishi | Zendy; Akihiko Konagaya | Zendy

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OBIYagns: a grid-based biochemical simulator with a parameter estimator

Author(s) -

Shuhei Kimura,

Takuji Kawasaki,

Mariko Hatakeyama,

Takashi Naka,

Fumikazu Konishi,

Akihiko Konagaya

Publication year - 2004

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bth122

Subject(s) - graphical user interface , computer science , estimator , grid , solver , ordinary differential equation , simulation , computational science , distributed computing , data mining , differential equation , operating system , statistics , programming language , mathematics , mathematical analysis , geometry

OBIYagns (yet another gene network simulator) is a biochemical system simulator that comprises a multiple-user Web-based graphical interface, an ordinary differential equation solver and a parameter estimators distributed over an open bioinformatics grid (OBIGrid). This grid-based biochemical simulation system can achieve high performance and provide a secure simulation environment for estimating kinetic parameters in an acceptable time period. OBIYagns can be applied to larger system biology-oriented simulation projects.

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