A strategy for assembling the maize (Zea mays L.) genome | Zendy

Scott Emrich | Zendy; Srinivas Aluru | Zendy; Yan Fu | Zendy; TsuiJung Wen | Zendy; Mahesh Narayanan | Zendy; Ling Guo | Zendy; Daniel Ashlock | Zendy; Patrick S. Schnable | Zendy

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A strategy for assembling the maize (Zea mays L.) genome

Author(s) -

Scott Emrich,

Srinivas Aluru,

Yan Fu,

TsuiJung Wen,

Mahesh Narayanan,

Ling Guo,

Daniel Ashlock,

Patrick S. Schnable

Publication year - 2004

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bth017

Subject(s) - sequence assembly , genome , scalability , computer science , software , pairwise comparison , computational biology , zea mays , reference genome , data mining , biology , gene , genetics , artificial intelligence , gene expression , transcriptome , database , agronomy , programming language

Because the bulk of the maize (Zea mays L.) genome consists of repetitive sequences, sequencing efforts are being targeted to its 'gene-rich' fraction. Traditional assembly programs are inadequate for this approach because they are optimized for a uniform sampling of the genome and inherently lack the ability to differentiate highly similar paralogs.

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