AntiHunter: searching BLAST output for EST antisense transcripts | Zendy

G Lavorgna | Zendy; Luca Sessa | Zendy; Alessandro Guffanti | Zendy; Lelio Lassandro | Zendy; Giorgio Casari | Zendy

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AntiHunter: searching BLAST output for EST antisense transcripts

Author(s) -

G Lavorgna,

Luca Sessa,

Alessandro Guffanti,

Lelio Lassandro,

Giorgio Casari

Publication year - 2004

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btg460

Subject(s) - annotation , sequence (biology) , genome , computer science , identification (biology) , computational biology , genetics , biology , gene , botany

AntiHunter is a new web-based tool for the identification of expressed sequence tag (EST) antisense transcripts from BLAST output. In order to perform an analysis, user is required to input a genomic sequence plus an associated list of transcript names and coordinates of the genomic region (i.e. genome annotation). After masking the repeated regions (if any), program will perform a BLASTN search of the input sequence versus the selected EST database, reporting by Email the EST entries that reveal a putative antisense transcript with respect to the user supplied list.

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