Phylo-VISTA: interactive visualization of multiple DNA sequence alignments | Zendy

Nameeta Shah | Zendy; Olivier Couronne | Zendy; L Pennacchio | Zendy; Michael Brudno | Zendy; Serafim Batzoglou | Zendy; E. Wes Bethel | Zendy; Edward M. Rubin | Zendy; Bernd Hamann | Zendy; Inna Dubchak | Zendy

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Phylo-VISTA: interactive visualization of multiple DNA sequence alignments

Author(s) -

Nameeta Shah,

Olivier Couronne,

L Pennacchio,

Michael Brudno,

Serafim Batzoglou,

E. Wes Bethel,

Edward M. Rubin,

Bernd Hamann,

Inna Dubchak

Publication year - 2004

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btg459

Subject(s) - visualization , phylogenetic tree , computer science , sequence (biology) , similarity (geometry) , sequence alignment , multiple sequence alignment , alignment free sequence analysis , plug in , data visualization , interactive visualization , data mining , information retrieval , biology , artificial intelligence , genetics , image (mathematics) , peptide sequence , gene , programming language

The power of multi-sequence comparison for biological discovery is well established. The need for new capabilities to visualize and compare cross-species alignment data is intensified by the growing number of genomic sequence datasets being generated for an ever-increasing number of organisms. To be efficient these visualization algorithms must support the ability to accommodate consistently a wide range of evolutionary distances in a comparison framework based upon phylogenetic relationships.

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