Classification of protein quaternary structure with support vector machine
Author(s) -
ShaoWu Zhang,
Quan Pan,
Hongcai Zhang,
YunLong Zhang,
Haiyu Wang
Publication year - 2003
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btg331
Subject(s) - support vector machine , pseudo amino acid composition , artificial intelligence , computer science , protein primary structure , pattern recognition (psychology) , protein sequencing , amino acid , algorithm , data mining , machine learning , mathematics , peptide sequence , biology , biochemistry , gene , dipeptide
Since the gap between sharply increasing known sequences and slow accumulation of known structures is becoming large, an automatic classification process based on the primary sequences and known three-dimensional structure becomes indispensable. The classification of protein quaternary structure based on the primary sequences can provide some useful information for the biologists. So a fully automatic and reliable classification system is needed. This work tries to look for the effective methods of extracting attribute and the algorithm for classifying the quaternary structure from the primary sequences.
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