JXP4BIGI: a generalized, Java XML-based approach for biological information gathering and integration | Zendy

Yihua Huang | Zendy; Tianyun Ni | Zendy; Lei Zhou | Zendy; Stanley Y. W. Su | Zendy

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JXP4BIGI: a generalized, Java XML-based approach for biological information gathering and integration

Author(s) -

Yihua Huang,

Tianyun Ni,

Lei Zhou,

Stanley Y. W. Su

Publication year - 2003

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btg327

Subject(s) - computer science , xml database , database , xml , data warehouse , java , xml framework , efficient xml interchange , streaming xml , xml validation , sql , data integration , information retrieval , world wide web , programming language

In the post-genomic era, biologists interested in systems biology often need to import data from public databases and construct their own system-specific or subject-oriented databases to support their complex analysis and knowledge discovery. To facilitate the analysis and data processing, customized and centralized databases are often created by extracting and integrating heterogeneous data retrieved from public databases. A generalized methodology for accessing, extracting, transforming and integrating the heterogeneous data is needed.

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