GABI-Kat SimpleSearch: a flanking sequence tag (FST) database for the identification of T-DNA insertion mutants in Arabidopsis thaliana | Zendy

Yong Li | Zendy; Mario G. Rosso | Zendy; N. Strizhov | Zendy; Prisca Viehoever | Zendy; Bernd Weißhaar | Zendy

Open Access

GABI-Kat SimpleSearch: a flanking sequence tag (FST) database for the identification of T-DNA insertion mutants in Arabidopsis thaliana

Author(s) -

Yong Li,

Mario G. Rosso,

N. Strizhov,

Prisca Viehoever,

Bernd Weißhaar

Publication year - 2003

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btg170

Subject(s) - sequence (biology) , genetics , arabidopsis thaliana , biology , dna , mutant , dna sequencing , genome , computational biology , database , computer science , gene

GABI-Kat SimpleSearch is a database of flanking sequence tags (FSTs) of T-DNA mutagenized Arabidopsis thaliana lines that were generated by the GABI-Kat project. Sequences flanking the T-DNA insertion sites were aligned to the A.thaliana genome sequence, annotated with information about the FST, the insertion site and the line from which the FST was derived. A web interface permits text-based as well as sequence-based searches for relevant insertions. GABI-Kat SimpleSearch aims to help biologists to quickly find T-DNA insertion mutants for their research.

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