Visual representation of database search results: the RHIMS Plot
Author(s) -
David Martin,
Pamela Hill,
Geoffrey J. Barton,
Andrew J. Flavell
Publication year - 2003
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btg116
Subject(s) - computer science , visualization , representation (politics) , software , similarity (geometry) , sequence (biology) , information retrieval , function (biology) , plot (graphics) , data mining , web server , simple (philosophy) , sequence database , database , the internet , world wide web , artificial intelligence , image (mathematics) , mathematics , programming language , statistics , philosophy , law , genetics , biology , biochemistry , epistemology , evolutionary biology , political science , politics , gene , chemistry
An algorithm and software are described that provide a fast method to produce a novel, function-oriented visualization of the results of a sequence database search. Text mining of sequence annotations allows position specific plots of potential functional similarity to be compared in a simple compact representation.
Accelerating Research
Robert Robinson Avenue,
Oxford Science Park, Oxford
OX4 4GP, United Kingdom
Address
John Eccles HouseRobert Robinson Avenue,
Oxford Science Park, Oxford
OX4 4GP, United Kingdom