FPV: fast protein visualization using Java 3DTM | Zendy

Tolga Can | Zendy; Yujun Wang | Zendy; Yuan-Fang Wang | Zendy; Jianwen Su | Zendy

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FPV: fast protein visualization using Java 3DTM

Author(s) -

Tolga Can,

Yujun Wang,

Yuan-Fang Wang,

Jianwen Su

Publication year - 2003

Publication title -

bioinformatics

Language(s) - Uncategorized

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btg104

Subject(s) - visualization , java , computer science , scene graph , rendering (computer graphics) , java applet , computer graphics (images) , graph , computational science , programming language , data mining , theoretical computer science

Many tools have been developed to visualize protein structures. Tools that have been based on Java 3D((TM)) are compatible among different systems and they can be run remotely through web browsers. However, using Java 3D for visualization has some performance issues with it. The primary concerns about molecular visualization tools based on Java 3D are in their being slow in terms of interaction speed and in their inability to load large molecules. This behavior is especially apparent when the number of atoms to be displayed is huge, or when several proteins are to be displayed simultaneously for comparison.

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