Open AccessPerfect phylogeny haplotyper: haplotype inferral using a tree model
Author(s) -
Ren-Hua Chung,
Dan Gusfield
Publication year - 2003
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btg078
Subject(s) - phylogenetics , executable , haplotype , population , genotype , tree (set theory) , biology , evolutionary biology , computational biology , computer science , genetics , medicine , combinatorics , programming language , gene , mathematics , environmental health
We have developed an efficient program, the Perfect Phylogeny Haplotyper (PPH) that takes in unphased population genotype data, and determines if that data can be explained by haplotype pairs that could have evolved on a perfect phylogeny.
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