Phylogenetic Web Profiler | Zendy

Philip Wong | Zendy; Grigory Kolesov | Zendy; Dmitrij Frishman | Zendy; Walid A. Houry | Zendy

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Phylogenetic Web Profiler

Author(s) -

Philip Wong,

Grigory Kolesov,

Dmitrij Frishman,

Walid A. Houry

Publication year - 2003

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btg064

Subject(s) - phylogenetic tree , genome , annotation , similarity (geometry) , web server , biology , selection (genetic algorithm) , web service , computer science , computational biology , world wide web , genetics , artificial intelligence , the internet , gene , image (mathematics)

Phylogenetic Web Profiler (PWP) is a web-based service designed to perform phylogenetic profiling of proteins against genomes. The current version offers a selection of 63 completed genomes and available plasmids as annotated in the PEDANT genome database. Unlike currently available applications, this tool offers several choices of ortholog prediction parameters including E-value cutoff, percent length difference tolerance, and annotation similarity. Additional features include tight integration with the PEDANT database and tools to analyze properties of predicted proteins. PWP should prove very useful for the analysis of functional-linkage between proteins.

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