Java editor for biological pathways | Zendy

Elmar Trost | Zendy; Hubert Hackl | Zendy; Michael Maurer | Zendy; Zlatko Trajanoski | Zendy

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Java editor for biological pathways

Author(s) -

Elmar Trost,

Hubert Hackl,

Michael Maurer,

Zlatko Trajanoski

Publication year - 2003

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btg052

Subject(s) - computer science , markup language , java , xml , graphics , function (biology) , process (computing) , computer graphics , programming language , world wide web , computer graphics (images) , biology , genetics

A visual Java-based tool for drawing and annotating biological pathways was developed. This tool integrates the possibilities of charting elements with different attributes (size, color, labels), drawing connections between elements in distinct characteristics (color, structure, width, arrows), as well as adding links to molecular biology databases, promoter sequences, information on the function of the genes or gene products, and references. It is easy to use and system independent. The result of the editing process is a PNG (portable network graphics) file for the images and XML (extended markup language) file for the appropriate links.

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