DomCut: prediction of inter-domain linker regions in amino acid sequences | Zendy

Mikita Suyama | Zendy; Osamu Ohara | Zendy

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DomCut: prediction of inter-domain linker regions in amino acid sequences

Author(s) -

Mikita Suyama,

Osamu Ohara

Publication year - 2003

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btg031

Subject(s) - linker , domain (mathematical analysis) , sequence (biology) , computer science , index (typography) , set (abstract data type) , interface (matter) , preference , algorithm , chemistry , mathematics , biochemistry , statistics , parallel computing , programming language , mathematical analysis , bubble , maximum bubble pressure method

DomCut is a program to predict inter-domain linker regions solely by amino acid sequence information. The prediction is made by using linker index deduced from a data set of domain/linker segments. The linker preference profile, which is the averaged linker index along a sequence, can be visualized in the graphical interface.

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