Modeling biological systems using Dynetica—a simulator of dynamic networks | Zendy

Lingchong You | Zendy; Apirak Hoonlor | Zendy; John Yin | Zendy

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Modeling biological systems using Dynetica—a simulator of dynamic networks

Author(s) -

Lingchong You,

Apirak Hoonlor,

John Yin

Publication year - 2003

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btg009

Subject(s) - computer science , user friendly , biological network , stochastic simulation , simulation , programming language , bioinformatics , mathematics , biology , statistics

We present Dynetica, a user-friendly simulator of dynamic networks for constructing, visualizing, and analyzing kinetic models of biological systems. In addition to generic reaction networks, Dynetica facilitates construction of models of genetic networks, where many reactions are gene expression and interactions among gene products. Further, it integrates the capability of conducting both deterministic and stochastic simulations.

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