Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs | Zendy

Giulio Formenti | Zendy; Linelle Abueg | Zendy; Angelo Brajuka | Zendy; Nadolina Brajuka | Zendy; Cristóbal Gallardo Alba | Zendy; Alice Maria Giani | Zendy; Olivier Fédrigo | Zendy; Erich D. Jarvis | Zendy

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Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs

Author(s) -

Giulio Formenti,

Linelle Abueg,

Angelo Brajuka,

Nadolina Brajuka,

Cristóbal Gallardo Alba,

Alice Maria Giani,

Olivier Fédrigo,

Erich D. Jarvis

Publication year - 2022

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btac460

Subject(s) - computer science , workflow , software , source code , consistency (knowledge bases) , sequence assembly , visualization , graph , genome , data mining , annotation , information retrieval , programming language , theoretical computer science , database , artificial intelligence , biology , biochemistry , gene expression , transcriptome , gene

With the current pace at which reference genomes are being produced, the availability of tools that can reliably and efficiently generate genome assembly summary statistics has become critical. Additionally, with the emergence of new algorithms and data types, tools that can improve the quality of existing assemblies through automated and manual curation are required.

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