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Normalization by distributional resampling of high throughput single-cell RNA-sequencing data
Author(s) -
Jared Brown,
Zijian Ni,
Chitrasen Mohanty,
Rhonda Bacher,
Christina Kendziorski
Publication year - 2021
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btab450
Subject(s) - normalization (sociology) , resampling , computer science , negative binomial distribution , r package , computational biology , identifier , rna seq , binomial distribution , data mining , algorithm , gene expression , biology , gene , statistics , mathematics , genetics , poisson distribution , transcriptome , computational science , sociology , anthropology , programming language
Normalization to remove technical or experimental artifacts is critical in the analysis of single-cell RNA-sequencing experiments, even those for which unique molecular identifiers are available. The majority of methods for normalizing single-cell RNA-sequencing data adjust average expression for library size (LS), allowing the variance and other properties of the gene-specific expression distribution to be non-constant in LS. This often results in reduced power and increased false discoveries in downstream analyses, a problem which is exacerbated by the high proportion of zeros present in most datasets.

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