Open AccessBathometer: lightning fast depth-of-reads query
Author(s) -
Udo Stenzel,
Susanne Horn
Publication year - 2021
Publication title -
bioinformatics
Language(s) - Uncategorized
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btab372
Subject(s) - computer science , license , mit license , information retrieval , software , data mining , programming language , operating system
The query for the number of reads overlapping a given region is a common step in the analysis of Illumina sequencing data. Sometimes, these queries are not conveniently precomputable. It seems beneficial to make this kind of arbitrary query as fast and convenient as possible.
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