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Capturing dynamic relevance in Boolean networks using graph theoretical measures
Author(s) -
Felix M. Weidner,
Julian Schwab,
Silke D Werle,
Nensi Ikonomi,
Ludwig Lausser,
Hans A. Kestler
Publication year - 2021
Publication title -
bioinformatics
Language(s) - Uncategorized
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btab277
Subject(s) - computer science , theoretical computer science , betweenness centrality , relevance (law) , set (abstract data type) , class (philosophy) , biological network , distributed computing , data mining , artificial intelligence , mathematics , programming language , combinatorics , centrality , political science , law
Interaction graphs are able to describe regulatory dependencies between compounds without capturing dynamics. In contrast, mathematical models that are based on interaction graphs allow to investigate the dynamics of biological systems. However, since dynamic complexity of these models grows exponentially with their size, exhaustive analyses of the dynamics and consequently screening all possible interventions eventually becomes infeasible. Thus, we designed an approach to identify dynamically relevant compounds based on the static network topology.

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