A critical assessment of gene catalogs for metagenomic analysis | Zendy

Seth Commichaux | Zendy; Nidhi Shah | Zendy; Jay Ghurye | Zendy; Alexander Stoppel | Zendy; Jessica A. Goodheart | Zendy; Guillermo G. Luque | Zendy; Michael P. Cummings | Zendy; Mihai Pop | Zendy

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A critical assessment of gene catalogs for metagenomic analysis

Author(s) -

Seth Commichaux,

Nidhi Shah,

Jay Ghurye,

Alexander Stoppel,

Jessica A. Goodheart,

Guillermo G. Luque,

Michael P. Cummings,

Mihai Pop

Publication year - 2021

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btab216

Subject(s) - metagenomics , construct (python library) , scripting language , computer science , data science , computational biology , microbiome , information retrieval , data mining , gene , biology , bioinformatics , programming language , genetics

Microbial gene catalogs are data structures that organize genes found in microbial communities, providing a reference for standardized analysis of the microbes across samples and studies. Although gene catalogs are commonly used, they have not been critically evaluated for their effectiveness as a basis for metagenomic analyses.

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