z-logo
open-access-imgOpen Access
BigDataProcessor2: a free and open-source Fiji plugin for inspection and processing of TB sized image data
Author(s) -
Christian Tischer,
Ashis Ravindran,
Sabine Reither,
Nicolas Chiaruttini,
Rainer Pepperkok,
Nils Norlin
Publication year - 2021
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btab106
Subject(s) - plug in , open source , computer science , image processing , open source software , image (mathematics) , computer graphics (images) , computer vision , software , operating system
Modern bioimaging and related areas such as sensor technology have undergone tremendous development over the last few years. As a result, contemporary imaging techniques, particularly electron microscopy (EM) and light sheet microscopy, can frequently generate datasets attaining sizes of several terabytes (TB). As a consequence, even seemingly simple data operations such as cropping, chromatic- and drift-corrections and even visualisation, poses challenges when applied to thousands of time points or tiles. To address this we developed BigDataProcessor2-a Fiji plugin facilitating processing workflows for TB sized image datasets.

The content you want is available to Zendy users.

Already have an account? Click here to sign in.
Having issues? You can contact us here
Accelerating Research

Address

John Eccles House
Robert Robinson Avenue,
Oxford Science Park, Oxford
OX4 4GP, United Kingdom