BAGET 2.0: an updated web tool for the effortless retrieval of prokaryotic gene context and sequence | Zendy

Benjamin Hepp | Zendy; Violette Da Cunha | Zendy; Florence Lorieux | Zendy; Jacques Oberto | Zendy

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BAGET 2.0: an updated web tool for the effortless retrieval of prokaryotic gene context and sequence

Author(s) -

Benjamin Hepp,

Violette Da Cunha,

Florence Lorieux,

Jacques Oberto

Publication year - 2021

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btab082

Subject(s) - context (archaeology) , computer science , sequence (biology) , world wide web , information retrieval , web site , computational biology , gene , gene sequence , biology , genetics , the internet , paleontology , phylogenetic tree

The retrieval of a single gene sequence and context from completely sequenced bacterial and archaeal genomes constitutes an intimidating task for the wet bench biologist. Existing web-based genome browsers are either too complex for routine use or only provide a subset of the available prokaryotic genomes.

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