Detecting evolutionary patterns of cancers using consensus trees
Author(s) -
Sarah Christensen,
Juho Kim,
Nicholas Chia,
Oluwasanmi Koyejo,
Mohammed El-Kebir
Publication year - 2020
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btaa801
Subject(s) - leverage (statistics) , consistency (knowledge bases) , computer science , tree (set theory) , evolutionary algorithm , heuristic , machine learning , artificial intelligence , mathematics , mathematical analysis
While each cancer is the result of an isolated evolutionary process, there are repeated patterns in tumorigenesis defined by recurrent driver mutations and their temporal ordering. Such repeated evolutionary trajectories hold the potential to improve stratification of cancer patients into subtypes with distinct survival and therapy response profiles. However, current cancer phylogeny methods infer large solution spaces of plausible evolutionary histories from the same sequencing data, obfuscating repeated evolutionary patterns.
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