Open AccessCONCUR: quick and robust calculation of codon usage from ribosome profiling data
Author(s) -
Michaela Frye,
Susanne Bornelöv
Publication year - 2020
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btaa733
Subject(s) - perl , ribosome profiling , computer science , profiling (computer programming) , codon usage bias , ribosome , start codon , computational biology , data mining , programming language , biology , genetics , messenger rna , rna , gene , genome
CONCUR is a standalone tool for codon usage analysis in ribosome profiling experiments. CONCUR uses the aligned reads in BAM format to estimate codon counts at the ribosome E-, P- and A-sites and at flanking positions.
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