Ribbon: intuitive visualization for complex genomic variation
Author(s) -
Maria Nattestad,
Robert Aboukhalil,
Chen-Shan Chin,
Michael C. Schatz
Publication year - 2020
Publication title -
bioinformatics
Language(s) - Uncategorized
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btaa680
Subject(s) - ribbon , visualization , variation (astronomy) , computer science , computational biology , biology , data mining , mathematics , geometry , physics , astrophysics
Ribbon is an alignment visualization tool that shows how alignments are positioned within both the reference and read contexts, giving an intuitive view that enables a better understanding of structural variants and the read evidence supporting them. Ribbon was born out of a need to curate complex structural variant calls and determine whether each was well supported by long-read evidence, and it uses the same intuitive visualization method to shed light on contig alignments from genome-to-genome comparisons.
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