Metaviral SPAdes: assembly of viruses from metagenomic data | Zendy

Dmitry Antipov | Zendy; Mikhail Raiko | Zendy; Alla Lapidus | Zendy; Pavel A. Pevzner | Zendy

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Metaviral SPAdes: assembly of viruses from metagenomic data

Author(s) -

Dmitry Antipov,

Mikhail Raiko,

Alla Lapidus,

Pavel A. Pevzner

Publication year - 2020

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btaa490

Subject(s) - metagenomics , human virome , computational biology , identification (biology) , genome , tree (set theory) , computer science , set (abstract data type) , biology , sequence assembly , genetics , gene , programming language , mathematical analysis , gene expression , botany , mathematics , transcriptome

Although the set of currently known viruses has been steadily expanding, only a tiny fraction of the Earth's virome has been sequenced so far. Shotgun metagenomic sequencing provides an opportunity to reveal novel viruses but faces the computational challenge of identifying viral genomes that are often difficult to detect in metagenomic assemblies.

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