Open AccessDeepNano-blitz: a fast base caller for MinION nanopore sequencers
Author(s) -
Vladimír Boža,
Peter Perešíni,
Broňa Brejová,
Tomáš Vinař
Publication year - 2020
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btaa297
Subject(s) - minion , computer science , nanopore sequencing , base (topology) , laptop , dna sequencer , identification (biology) , operating system , real time computing , dna sequencing , dna , mathematical analysis , genetics , botany , mathematics , biology
Oxford Nanopore MinION is a portable DNA sequencer that is marketed as a device that can be deployed anywhere. Current base callers, however, require a powerful GPU to analyze data produced by MinION in real time, which hampers field applications.
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