Phigaro: high-throughput prophage sequence annotation | Zendy

Elizaveta V. Starikova | Zendy; Polina Tikhonova | Zendy; Nikita A. Prianichnikov | Zendy; Chris M. Rands | Zendy; Evgeny M. Zdobnov | Zendy; Ele. Ilina | Zendy; Vadim M. Govorun | Zendy

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Phigaro: high-throughput prophage sequence annotation

Author(s) -

Elizaveta V. Starikova,

Polina Tikhonova,

Nikita A. Prianichnikov,

Chris M. Rands,

Evgeny M. Zdobnov,

Ele. Ilina,

Vadim M. Govorun

Publication year - 2020

Publication title -

bioinformatics

Language(s) - Uncategorized

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btaa250

Subject(s) - prophage , python (programming language) , annotation , computer science , source code , genome , metagenomics , transposable element , computational biology , biology , programming language , genetics , artificial intelligence , gene , escherichia coli , bacteriophage

Phigaro is a standalone command-line application that is able to detect prophage regions taking raw genome and metagenome assemblies as an input. It also produces dynamic annotated 'prophage genome maps' and marks possible transposon insertion spots inside prophages. It is applicable for mining prophage regions from large metagenomic datasets.

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