Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data | Zendy

Kun Sun | Zendy

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Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data

Author(s) -

Kun Sun

Publication year - 2020

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btaa171

Subject(s) - adapter (computing) , computer science , preprocessor , bottleneck , mit license , data pre processing , data mining , software , embedded system , computer hardware , operating system , artificial intelligence

Next-generation sequencing (NGS) data frequently suffer from poor-quality cycles and adapter contaminations therefore need to be preprocessed before downstream analyses. With the ever-growing throughput and read length of modern sequencers, the preprocessing step turns to be a bottleneck in data analysis due to unmet performance of current tools. Extra-fast and accurate adapter- and quality-trimming tools for sequencing data preprocessing are therefore still of urgent demand.

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