ProbeMatchDB—a web database for finding equivalent probes across microarray platforms and species | Zendy

Pinglang Wang | Zendy; Fei Ding | Zendy; Hsienyuan Chiang | Zendy; Robert C. Thompson | Zendy; Stanley J. Watson | Zendy; Fan Meng | Zendy

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ProbeMatchDB—a web database for finding equivalent probes across microarray platforms and species

Author(s) -

Pinglang Wang,

Fei Ding,

Hsienyuan Chiang,

Robert C. Thompson,

Stanley J. Watson,

Fan Meng

Publication year - 2002

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/18.3.488

Subject(s) - microarray databases , clone (java method) , microarray , microarray analysis techniques , computer science , computational biology , expressed sequence tag , database , set (abstract data type) , gene chip analysis , gene , biology , world wide web , complementary dna , information retrieval , bioinformatics , genetics , gene expression , programming language

ProbeMatchDB is a web-based database designed to facilitate the search of EST/cDNA sequences or STS markers that can be used to represent the same gene across different microarray platforms and species. It can be used for finding equivalent EST clones in the Research Genetics sequence verified clone set based on results from Affymetirx GeneChips. It will also help to identify probes representing orthologous genes across human, mouse and rat on different microarray platforms.

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