GenomePixelizer—a visualization program for comparative genomics within and between species | Zendy

Alexander Kozik | Zendy; Elena Kochetkova | Zendy; Richard Michelmore | Zendy

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GenomePixelizer—a visualization program for comparative genomics within and between species

Author(s) -

Alexander Kozik,

Elena Kochetkova,

Richard Michelmore

Publication year - 2002

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/18.2.335

Subject(s) - visualization , computer science , genome , sequence (biology) , software , genomics , gene duplication , gene , computational biology , information retrieval , world wide web , data mining , biology , programming language , genetics

GenomePixelizer is a visualization tool that generates custom images of the physical or genetic positions of specified sets of genes in whole genomes or parts of genomes. Multiple sets of genes can be shown simultaneously with user-defined characteristics displayed. It allows the analysis of duplication events within and between species based on sequence similarities. The program is written in Tcl/Tk and works on any platform that supports the Tcl/Tk toolkit. GenomePixelizer generates HTML ImageMap tags for each gene in the image allowing links to databases. Images can be saved and presented on web pages.

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