PALI: a database of alignments and phylogeny of homologous protein structures | Zendy

S. Sujatha | Zendy; Balaji Santhanam | Zendy; Narayanaswamy Srinivasan | Zendy

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PALI: a database of alignments and phylogeny of homologous protein structures

Author(s) -

S. Sujatha,

Balaji Santhanam,

Narayanaswamy Srinivasan

Publication year - 2001

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/17.4.375

Subject(s) - phylogenetic tree , protein superfamily , homologous chromosome , sequence (biology) , basis (linear algebra) , sequence alignment , computer science , computational biology , phylogenetics , sequence database , biology , database , peptide sequence , genetics , mathematics , gene , geometry

PALI is a database of structure-based sequence alignments and phylogenetic relationships derived on the basis of three-dimensional structures of homologous proteins. This database enables grouping of pairs of homologous protein structures on the basis of their sequence identity calculated from the structure-based alignment and PALI also enables association of a new sequence to a family and automatic generation of a dendrogram combining the query sequence and homologous protein structures.

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