Storing biological sequence databases in relational form | Zendy

Guochun Xie | Zendy; R. DeMarco | Zendy; Richard Blevins | Zendy; Yuhong Wang | Zendy

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Storing biological sequence databases in relational form

Author(s) -

Guochun Xie,

R. DeMarco,

Richard Blevins,

Yuhong Wang

Publication year - 2000

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/16.3.288

Subject(s) - computer science , relational database management system , database , relational database , perl , programming language , java , oracle , database schema , information retrieval , database design

We have created a set of applications using Perl and Java in combination with XML technology to install biological sequence databases into an Oracle RDBMS. An easy-to-use interface using Java has been created for database query and other tools developed to integrate with our in-house bioinformatics applications. AVAILIBILITY: The database schema, DTD file, and source codes are available from the authors via email.

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