SAWTED: Structure Assignment With Text Description—Enhanced detection of remote homologues with automated SWISS-PROT annotation comparisons | Zendy

Robert M. MacCallum | Zendy; Lawrence A. Kelley | Zendy; Michael J.E. Sternberg | Zendy

Open Access

SAWTED: Structure Assignment With Text Description—Enhanced detection of remote homologues with automated SWISS-PROT annotation comparisons

Author(s) -

Robert M. MacCallum,

Lawrence A. Kelley,

Michael J.E. Sternberg

Publication year - 2000

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/16.2.125

Subject(s) - computer science , benchmark (surveying) , information retrieval , web server , annotation , filter (signal processing) , function (biology) , server , sequence (biology) , data mining , database , artificial intelligence , world wide web , the internet , biology , genetics , geodesy , computer vision , geography , evolutionary biology

Sequence database search methods often identify putative sub-threshold hits of known function or structure for a given query sequence. It is widespread practice to filter these hits by hand using knowledge of function and other factors; to the expert, some hits may appear more sensible than others. SAWTED (Structure Assignment With Text Description) is an automated solution to this post-filtering problem which will be applicable to large scale genome assignments.

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