WWW access to the SYSTERS protein sequence cluster set. | Zendy

A. Krause | Zendy; P Nicod√®me | Zendy; Erich BornbergBauer | Zendy; Marc Rehmsmeier | Zendy; Martin Vingron | Zendy

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WWW access to the SYSTERS protein sequence cluster set.

Author(s) -

A. Krause,

P Nicod√®me,

Erich BornbergBauer,

Marc Rehmsmeier,

Martin Vingron

Publication year - 1999

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/15.3.262

Subject(s) - sequence (biology) , cluster (spacecraft) , computer science , set (abstract data type) , protein sequencing , computational biology , peptide sequence , programming language , biology , genetics , gene

We present a Web server where the SYSTERS cluster set of the non-redundant protein database consisting of sequences from SWISS-PROT and PIR is being made available for querying and browsing. The cluster set can be searched with a new sequence using the SSMAL search tool. Additionally, a multiple alignment is generated for each cluster and annotated with domain information from the Pfam protein family database.

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