Application of distance geometry to 3D visualization of sequence relationships. | Zendy

Mark J. Forster | Zendy; Anthony Heath | Zendy; Muhammad Afzal | Zendy

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Application of distance geometry to 3D visualization of sequence relationships.

Author(s) -

Mark J. Forster,

Anthony Heath,

Muhammad Afzal

Publication year - 1999

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/15.1.89

Subject(s) - perl , visualization , sequence (biology) , vrml , computer science , sequence alignment , multiple sequence alignment , computer graphics (images) , biology , peptide sequence , programming language , artificial intelligence , gene , genetics , virtual reality

We describe the application of distance geometry methods to the three-dimensional visualization of sequence relationships, with examples for mumps virus SH gene cDNA and prion protein sequences. Sequence-sequence distance measures may be obtained from either a multiple sequence alignment or from sets of pairwise alignments.

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