Open AccessPredicting RNA H-type pseudoknots with the massively parallel genetic algorithm
Author(s) -
Bruce A. Shapiro,
Jin Wu
Publication year - 1997
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/13.4.459
Subject(s) - massively parallel , computer science , rna , algorithm , massive parallel sequencing , type (biology) , parallel computing , computational biology , biology , genetics , dna , gene , dna sequencing , ecology
Using the genetic algorithm (GA) for RNA folding on a massively parallel supercomputer, MasPar MP-2 with 16,384 processors, we successfully predicted the existence of H-type pseudoknots in several sequences.
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