Evolution and structural diversification ofNictaba-like lectin genes in food crops with a focus on soybean (Glycine max)
Author(s) -
Sofie Van Holle,
Pierre Rougé,
Els J. M. Van Damme
Publication year - 2016
Publication title -
annals of botany
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.567
H-Index - 176
eISSN - 1095-8290
pISSN - 0305-7364
DOI - 10.1093/aob/mcw259
Subject(s) - biology , medicago truncatula , gene family , lotus japonicus , botany , comparative genomics , genome , gene , oryza sativa , synteny , genetics , genomics , symbiosis , bacteria , mutant
The Nictaba family groups all proteins that show homology to Nictaba, the tobacco lectin. So far, Nictaba and an Arabidopsis thaliana homologue have been shown to be implicated in the plant stress response. The availability of more than 50 sequenced plant genomes provided the opportunity for a genome-wide identification of Nictaba -like genes in 15 species, representing members of the Fabaceae, Poaceae, Solanaceae, Musaceae, Arecaceae, Malvaceae and Rubiaceae. Additionally, phylogenetic relationships between the different species were explored. Furthermore, this study included domain organization analysis, searching for orthologous genes in the legume family and transcript profiling of the Nictaba -like lectin genes in soybean.
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