Variable presence of the inverted repeat and plastome stability inErodium
Author(s) -
John C. Blazier,
Robert K. Jansen,
Jeffrey P. Mower,
Madhu Govindu,
Jin Zhang,
Mao-Lun Weng,
Tracey A. Ruhlman
Publication year - 2016
Publication title -
annals of botany
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.567
H-Index - 176
eISSN - 1095-8290
pISSN - 0305-7364
DOI - 10.1093/aob/mcw065
Subject(s) - biology , chloroplast dna , inverted repeat , stability (learning theory) , botany , evolutionary biology , genetics , phylogenetics , genome , machine learning , computer science , gene
Several unrelated lineages such as plastids, viruses and plasmids, have converged on quadripartite genomes of similar size with large and small single copy regions and a large inverted repeat (IR). Except for Erodium (Geraniaceae), saguaro cactus and some legumes, the plastomes of all photosynthetic angiosperms display this structure. The functional significance of the IR is not understood and Erodium provides a system to examine the role of the IR in the long-term stability of these genomes. We compared the degree of genomic rearrangement in plastomes of Erodium that differ in the presence and absence of the IR.
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