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A Construction of Pooling Designs with Some Happy Surprises
Author(s) -
A. Dyachkov,
Frank K. Hwang,
A. Macula,
P.A. Vilenkin,
Chih-wen Weng
Publication year - 2005
Publication title -
journal of computational biology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.585
H-Index - 95
eISSN - 1557-8666
pISSN - 1066-5277
DOI - 10.1089/cmb.2005.12.1129
Subject(s) - pooling , subspace topology , computer science , rank (graph theory) , relation (database) , data mining , group testing , construct (python library) , identification (biology) , object (grammar) , matrix (chemical analysis) , artificial intelligence , mathematics , programming language , combinatorics , botany , biology , materials science , composite material
The screening of data sets for "positive data objects" is essential to modern technology. A (group) test that indicates whether a positive data object is in a specific subset or pool of the dataset can greatly facilitate the identification of all the positive data objects. A collection of tested pools is called a pooling design. Pooling designs are standard experimental tools in many biotechnical applications. In this paper, we use the (linear) subspace relation coupled with the general concept of a "containment matrix" to construct pooling designs with surprisingly high degrees of error correction (detection.) Error-correcting pooling designs are important to biotechnical applications where error rates often are as high as 15%. What is also surprising is that the rank of the pooling design containment matrix is independent of the number of positive data objects in the dataset.

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