Open AccessEvolutionary change in 5S RNA secondary structure and a phylogenic tree of 54 5S RNA species.
Author(s) -
Hiroshi Hori,
Syozo Osawa
Publication year - 1979
Publication title -
proceedings of the national academy of sciences of the united states of america
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 5.011
H-Index - 771
eISSN - 1091-6490
pISSN - 0027-8424
DOI - 10.1073/pnas.76.1.381
Subject(s) - rna , protein secondary structure , nucleotide , phylogenetic tree , biology , nucleic acid secondary structure , nucleic acid structure , non coding rna , genetics , computational biology , phylogenetics , evolutionary biology , gene , biochemistry
Secondary structure models of 54 5S RNA species are constructed based on the comparative analyses of their primary structure. All 5S RNAs examined have essentially the same secondary structure. However, there are revealing characteristic differences between eukaryotic and prokaryotic types. The prokaryotic 5S RNAs may be further classified into two types, one having 120 nucleotides (120-N type) and another having 116 (116-N type). A possible mechanism for the conversion of the prokaryotic 116-N type to the 120-N type 5S RNAs (or vice versa) is discussed on the basis of their nucleotide alignments. Finally, by comparing the nucleotide alignments, we propose a phylogenic tree of the 54 5S RNA species.