Communication: κ-dynamics—An exact method for accelerating rare event classical molecular dynamics
Author(s) -
ChunYaung Lu,
Dmitrii E. Makarov,
Graeme Henkelman
Publication year - 2010
Publication title -
the journal of chemical physics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.071
H-Index - 357
eISSN - 1089-7690
pISSN - 0021-9606
DOI - 10.1063/1.3514030
Subject(s) - state (computer science) , trajectory , statistical physics , transition state theory , molecular dynamics , dynamics (music) , transition state , distribution (mathematics) , product (mathematics) , event (particle physics) , physics , chemistry , classical mechanics , computational chemistry , mathematics , quantum mechanics , kinetics , mathematical analysis , reaction rate constant , algorithm , biochemistry , geometry , acoustics , catalysis
κ-dynamics is an accelerated molecular dynamics method for systems with slow transitions between stable states. Short trajectories are integrated from a transition state separating a reactant state from products. The first trajectory found that leads directly to a product without recrossing the transition state and starts in the reactant state is followed. The transition time is drawn from a distribution given by the transition state theory rate and the number of attempted trajectories. Repeating this procedure from each state visited gives a statistically exact state-to-state trajectory.
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