Mesoscopic Properties of Molecular Folding and Aggregation Processes
Author(s) -
Michael Bachmann,
Wolfhard Janke,
Jesús Clemente-Gallardo,
Pierpaolo Bruscolini,
F. Castejón,
P. M. Echenique,
José Félix Sáenz-Lorenzo
Publication year - 2008
Publication title -
aip conference proceedings
Language(s) - English
Resource type - Conference proceedings
SCImago Journal Rank - 0.177
H-Index - 75
eISSN - 1551-7616
pISSN - 0094-243X
DOI - 10.1063/1.3033357
Subject(s) - mesoscopic physics , folding (dsp implementation) , phase transition , chemical physics , statistical physics , molecular dynamics , macromolecule , crystallization , physics , chemistry , biological system , computational chemistry , thermodynamics , biochemistry , quantum mechanics , biology , engineering , electrical engineering
Protein folding, peptide aggregation and crystallization, as well asadsorption of molecules on soft or solid substrates have an essential featurein common: In all these processes, structure formation is guided by acollective, cooperative behavior of the molecular subunits lining up to buildchainlike macromolecules. Proteins experience conformational transitionsrelated to thermodynamic phase transitions. For chains of finite length, animportant difference of crossovers between conformational (pseudo)phases is,however, that these transitions are typically rather smooth processes, i.e.,thermodynamic activity is not necessarily signalized by strong entropic orenergetic fluctuations. Nonetheless, in order to understand generic propertiesof molecular structure-formation processes, the analysis of mesoscopic modelsfrom a statistical physics point of view enables first insights into the natureof conformational transitions in small systems. Here, we review recent resultsobtained by means of sophisticated generalized-ensemble computer simulations ofminimalistic coarse-grained models.
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