Big knowledge from big data in functional genomics
Author(s) -
Chris P. Ponting
Publication year - 2017
Publication title -
emerging topics in life sciences
Language(s) - English
Resource type - Journals
eISSN - 2397-8562
pISSN - 2397-8554
DOI - 10.1042/etls20170129
Subject(s) - organism , big data , genomics , causation , crispr , data science , function (biology) , computational biology , population , human genome , biology , personal genomics , functional genomics , genome , computer science , genetics , data mining , epistemology , gene , medicine , philosophy , environmental health
With so much genomics data being produced, it might be wise to pause and consider what purpose this data can or should serve. Some improve annotations, others predict molecular interactions, but few add directly to existing knowledge. This is because sequence annotations do not always implicate function, and molecular interactions are often irrelevant to a cell's or organism's survival or propagation. Merely correlative relationships found in big data fail to provide answers to the Why questions of human biology. Instead, those answers are expected from methods that causally link DNA changes to downstream effects without being confounded by reverse causation. These approaches require the controlled measurement of the consequences of DNA variants, for example, either those introduced in single cells using CRISPR/Cas9 genome editing or that are already present across the human population. Inferred causal relationships between genetic variation and cellular phenotypes or disease show promise to rapidly grow and underpin our knowledge base.
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