Reconstruction of a generic metabolic network model of cancer cells
Author(s) -
Mahdieh Hadi,
SayedAmir Marashi
Publication year - 2014
Publication title -
molecular biosystems
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.942
H-Index - 96
eISSN - 1742-206X
pISSN - 1742-2051
DOI - 10.1039/c4mb00300d
Subject(s) - cancer , metabolic network , computational biology , cancer cell , computer science , biology , genetics
A promising strategy for finding new cancer drugs is to use metabolic network models to investigate the essential reactions or genes in cancer cells. In this study, we present a generic constraint-based model of cancer metabolism, which is able to successfully predict the metabolic phenotypes of cancer cells. This model is reconstructed by collecting the available data on tumor suppressor genes. Notably, we show that the activation of oncogene related reactions can be explained by the inactivation of tumor suppressor genes. We show that in a simulated growth medium similar to the body fluids, our model outperforms the previously proposed model of cancer metabolism in predicting expressed genes.
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