Querying Drosophila In-Situ Expression Data using SPARQL and D2RQ | Zendy

Chris Mungall | Zendy

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Querying Drosophila In-Situ Expression Data using SPARQL and D2RQ

Author(s) -

Chris Mungall

Publication year - 2011

Publication title -

nature precedings

Language(s) - English

Resource type - Journals

ISSN - 1756-0357

DOI - 10.1038/npre.2011.5522.1

Subject(s) - sparql , computer science , on the fly , expression (computer science) , ontology , drosophila melanogaster , drosophila (subgenus) , information retrieval , gene ontology , computational biology , gene expression , gene , biology , rdf , genetics , semantic web , philosophy , epistemology , programming language , operating system

I describe a SPARQL endpoint for a database containing annotated images of gene expression in fruitfly embryogenesis. The images depict the actual expression of genes at a microscopic level using a technique called insitu hybridisation. The results were recorded in a relational database, and the images were annotated using the fly anatomy ontology

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